@dkocher commented

What protocol do you use to connect to the server?

39bca21 commented

Plain FTP.

@dkocher commented

Please post the transcript from the log drawer of the Transfers window. Choose ⌘-L on Mac.

39bca21 commented

Here you go. Would prefer if file wasn't made public.

@dkocher commented

Looks like the transcript from the browser window. Can you double check to open the transcript from the Transfers window prior restarting a transfer.

39bca21 commented

That was blank, so I Cmd+L and sent one I saw. Here is one from blank Transfers window after uploading file.

@dkocher commented

Thanks for the transcript where we can see the source of the error.

MFMT 20170123145833 /public_html/monomania/templates/template_theproject/header.tpl-5Eodd7JH
550 utime(/public_html/monomania/templates/template_theproject/header.tpl-5Eodd7JH): No such file or directory

39bca21 commented

If you mean the error is because no file exists, that's not true. See previous screenshots of file in Finder and when transferred to server. The files are being found and replaced, problem is the modified date on the server isn't being kept and changed to today's date. I think the problem is when files are replaced, Cyberduck thinks file is being modified, it's not. The data in the file hasn't changed, so file shouldn't be marked as modified regardless of whether it's being uploaded or downloaded (unless you tick off the preferences to keep timestamps).

@dkocher commented

As a workaround, uncheck the option Preferences → Transfers → Uploads → Upload with temporary filename.

@dkocher commented

In 38bcfe9.